PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G06200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 288aa    MW: 31726.2 Da    PI: 8.5858
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G06200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.18.6e-5061531129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                      +ppGfrFhP+d+elv +yL +k+++                 +i +vd++k+ePwdLp ++  + kewyfFs rd+kyatg+r+nrat+sgyWk
  OGLUM08G06200.1   6 MPPGFRFHPRDDELVLDYLLHKLAAGGrgggvY---GggggvAIVDVDLNKCEPWDLPDAACVGGKEWYFFSLRDRKYATGHRTNRATRSGYWK 96 
                      79********************99888555541...1455546***************7666789***************************** PP

              NAM  85 atgkdkevlsk......kgel........vglkktLvfykgrapkgektdWvmheyrle 129
                      atgkd++++++      +           vg++ktLvfy+grapkg+kt+Wvmhe+rle
  OGLUM08G06200.1  97 ATGKDRSITRRssissgE--PsssaaaaaVGMRKTLVFYRGRAPKGRKTEWVMHEFRLE 153
                      **********86666550..155566666***************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-553171IPR003441NAC domain
PROSITE profilePS5100552.9956171IPR003441NAC domain
PfamPF023654.3E-267152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MVEARMPPGF RFHPRDDELV LDYLLHKLAA GGRGGGVYGG GGGVAIVDVD LNKCEPWDLP  60
DAACVGGKEW YFFSLRDRKY ATGHRTNRAT RSGYWKATGK DRSITRRSSI SSGEPSSSAA  120
AAAVGMRKTL VFYRGRAPKG RKTEWVMHEF RLEPQPLHLK EDWVLCRVFY KTRQTIPSPS  180
SEEAVTLPNE LDLPAMPSLP PLIDAYIAFD SAPTTMPSMV GSYEQVSCFS GLPALPMKGS  240
ISFGDLLAMD TSAEKKAIRV LHNSNTAKLE LSPDWGQESG LSQMWNPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swp_D1e-43117115168NAC domain-containing protein 19
3swp_C1e-43117115168NAC domain-containing protein 19
3swp_B1e-43117115168NAC domain-containing protein 19
3swp_A1e-43117115168NAC domain-containing protein 19
3swm_D1e-43117115168NAC domain-containing protein 19
3swm_C1e-43117115168NAC domain-containing protein 19
3swm_B1e-43117115168NAC domain-containing protein 19
3swm_A1e-43117115168NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1201970.0AK120197.1 Oryza sativa Japonica Group cDNA clone:J013036M14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648318.10.0PREDICTED: NAC domain-containing protein 21/22 isoform X1
SwissprotQ84TE68e-79NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A0E0AS040.0A0A0E0AS04_9ORYZ; Uncharacterized protein
STRINGBGIOSGA027481-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.22e-75NAC domain containing protein 1